Fink Software Mac Os X
Posted By admin On 02.08.20From OS X Scientific Computing
Fetch off everything user needs from Mac HD.; tar up their directory and move it off (or use ZipIt) Install/upgrade Mac OS 9.1 from new CD; Do any firmware upgrades (asu.info.apple.com).Press the Programmer's key on the right of the Mac during reboot.Reboot again pressing the 'C' key with the OS-X CD in. Install OS-X but do not wipe the disk. Fink is a project that wants to bring the full world of Unix Open Source software to Darwin and Mac OS X. As a result, we have two main goals. First, to modify existing Open Source software so that it will compile and run on Mac OS X. (This process is called porting.).
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This is nothing more than a repackaged fink installation, combined with an automatic nightly build system. It should have the most current bleeding-edge pre-release. If you need something more current than what is in fink, or you just don't want to install fink, then use this.
By far the most straightforward way to compile Coot from sourcecode is to use the Fink package management system. Paul Emsley and I have invested considerable time into getting this to work well, and it is the best pathway to obtain the most stable version. Once you have a working fink installation, all you have to do is issue the command
whenever you require the latest version.
A more detailed description on how to install coot with fink is linked here.
If you have set up fink to use my pre-compiled debian binaries, you can speed up the process considerably. Just issue the command
A more detailed description on how to install a pre-compiled coot with fink is linked here. Be sure to use the so-called 'unstable' branch of fink to get the latest pre-releases of coot: How to Activate the Unstable Branch
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Fink Download Mac Os X
The official Coot Wiki is now part of the CCP4 wiki.This page deals with issues specific to installation on OS X.
The fink package for coot recommends installing raster3d and/or povray. When this is set up, simply pressing on the 'F8' key on your keyboard will result in a ray-traced image of the display popping up in Preview. Preview in turn will let you enhance the image, as it comes out a bit subdued by default. The following screenshot shows how this enhancement works. (You can see I tweaked exposure slightly, and gamma a bit, and saturation a fair amount).
Click here or on the image above to see a full-sized screenshot.
I wrote a coot wrapper shell script that lets you convert xplor/cns maps on the fly (you need to install mapman first) and has a few other enhancements.
I also made a Coot OS X applet that allows you to drag and drop a cns/xplor or ccp4 mapfile or any other coot-compatable file (mtz or pdb file, for example). Using the File > Get Info dialog, you can program this applet to open all .map and all .mtz files, if you want to, making these files double-clickable.
Download the Applet (requires a separate working coot installation)
LCD Stereo: Zalman monitor
The least expensive and perhaps best option for stereographic display is the new Zalman LCD monitor.
Please refer to the COOT wiki page that describes how to set everything up.
Hardware Stereo
Please note: Apple broke stereo support in earlier versions of 10.5, but with 10.5.6, it is now reported to be working correctly.
Apple now supports stereo in a window with Apple's implementation of X11, so coot should be able to work with this if you have the appropriate hardware (CRT and video card, as well as transmitter and glasses). I do not, so I will have to leave this for someone who does.
To get this to work, you need to have the latest version of Apple's X11.app installed, and then each user needs to issue the following command:
Hardware stereo on coot requires you compile with gtkglext1. The fink version of coot forces you to do so, so it should just work.
The system reconfigures the guest OS code, which would normally run in ring 0, to execute in ring 1 on the host hardware. Because this code contains many privileged instructions which cannot run natively in ring 1, VirtualBox employs a Code Scanning and Analysis Manager (CSAM) to scan the ring 0 code recursively before its first execution to identify problematic instructions and then calls the Patch Manager (PATM) to perform in-situ patching. Virtual host software for mac. This replaces the instruction with a jump to a VM-safe equivalent compiled code fragment in hypervisor memory. The guest user-mode code, running in ring 3, generally runs directly on the host hardware in ring 3.In both cases, VirtualBox uses CSAM and PATM to inspect and patch the offending instructions whenever a fault occurs. VirtualBox also contains a, based on to recompile any or code entirely (e.g.
Side-by-side crosseyed stereo
As of version 0.2, coot can also have a side-by-side cross-eyed stereo display. Then all you have to do is cross your eyes and you see stereo. Never mind that this will destroy your vision and eye muscles, it works really well. I only got the map displayed on one side until Paul suggested including the following in my .coot(rc) startup file:
Fink Software Mac Os X Lion 10 7 5 11g63 11g63 Upgrade To 10 8
The official Coot Wiki is now part of the CCP4 wiki.This page deals with issues specific to installation on OS X.
Is your Mac up to date with the latest version of the Mac operating system (macOS or OS X)? Is it using the version required by some product or feature? Which versions are earlier (older) or later (newer, more recent) than the version currently installed? To find out, learn which version is installed now.
If your macOS isn't up to date, you may be able to update to a later version.
Which macOS version is installed?
From the Apple menu in the corner of your screen, choose About This Mac. You'll see the macOS name, such as macOS Mojave, followed by its version number. If some product or feature requires you to know the build number as well, click the version number to see it.
This example shows macOS Catalina version 10.15 build 19A583.
Which macOS version is the latest?
Fink Osx
These are all Mac operating systems, starting with the most recent. When a major new macOS is released, it gets a new name, such as macOS Catalina. And as updates that change the macOS version number become available, this article is updated to show the latest version of that macOS.
If your Mac is using an earlier version of any Mac operating system, you should install the latest Apple software updates, which can include important security updates and updates for the apps installed by macOS, such as Safari, Books, Messages, Mail, Music, Calendar, and Photos.
| macOS | Latest version |
|---|---|
| macOS Catalina | 10.15.5 |
| macOS Mojave | 10.14.6 |
| macOS High Sierra | 10.13.6 |
| macOS Sierra | 10.12.6 |
| OS X El Capitan | 10.11.6 |
| OS X Yosemite | 10.10.5 |
| OS X Mavericks | 10.9.5 |
| OS X Mountain Lion | 10.8.5 |
| OS X Lion | 10.7.5 |
| Mac OS X Snow Leopard | 10.6.8 |
| Mac OS X Leopard | 10.5.8 |
| Mac OS X Tiger | 10.4.11 |
| Mac OS X Panther | 10.3.9 |
| Mac OS X Jaguar | 10.2.8 |
| Mac OS X Puma | 10.1.5 |
| Mac OS X Cheetah | 10.0.4 |
Learn more
- Always use the macOS that came with your Mac, or a compatible newer version.
- Learn how to reinstall macOS from macOS Recovery.